Lin Ye | Nanjing University

Research Interests

Biological Wastewater Treatment
Environmental Microbiology
Environmental Microbiome

Education

2008-2012 Ph.D. in Environmental Engineering, The University of Hong Kong (Advisor: Tong Zhang).
2005-2008 M.E. in Environmental Engineering, Nanjing University (Advisor: Xin Yu).
2001-2005 B.E. in Environmental Engineering, Jiangnan University.

Research and Professional Experience

2022-present Professor, Nanjing University.
2015-2022 Associate Professor, Nanjing University.
2013-2015 Postdoctoral Fellow, The University of Hong Kong (Advisor: Tong Zhang).
2015-2022 Postdoctoral Fellow, University of Illinois at Urbana-Champaign (Advisor: Wen-Tso Liu).

Selected Publications

Large-scale comparative analysis reveals different bacterial community structures in full-and lab-scale wastewater treatment bioreactors

Yanyan Ma, Dongni Rui, Haonan Dong, Xuxiang Zhang, Lin Ye*

Water Research. 2023, 120222
Aerobic starvation treatment of activated sludge enhances the degradation efficiency of refractory organic compounds

Haohao Sun, Juntao Xia, Bing Wu, Hongqiang Ren, Xuxiang Zhang*, Lin Ye*

Water Research, 2022. 224:119069.
Stable isotope probing reveals specific assimilating bacteria of refractory organic compounds in activated sludge

Haohao Sun, Kailong Huang, Xuxiang Zhang, Hongqiang Ren, Lin Ye*

Water Research. 2022, 118105.
Bacterial enrichment in highly-selective acetate-fed bioreactors and its application in rapid biofilm formation

Haohao Sun, Ran Mei, Xu-Xiang Zhang, Hongqiang Ren, Wen-Tso Liu, Lin Ye*

Water Research. 2020, 115359.
Machine learning-aided analyses of thousands of draft genomes reveal specific features of activated sludge processes

Lin Ye*, Ran Mei, Wen-Tso Liu, Hongqiang Ren, Xu-Xiang Zhang*

Microbiome. 2020, 8:16.
Aromatic compounds lead to increased abundance of antibiotic resistance genes in wastewater treatment bioreactors

Juntao Xia, Haohao Sun, Xu-Xiang Zhang, Tong Zhang, Hongqiang Ren, Lin Ye*

Water Research. 2019, 166:115073.
Metagenomic insights into ultraviolet disinfection effects on antibiotic resistome in biologically treated wastewater

Qing Hu, Xu-Xiang Zhang*, Shuyu Jia, Kailong Huang, Junying Tang, Peng Shi, Lin Ye*

Water Research. 2016, 101:309-317.
Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

Lin Ye, Jon Amberg, Duane Chapman, Mark Gaikowski, Wen-Tso Liu

The ISME journal. 2014, 8:541-551.
Microbial structures, functions and metabolic pathways in wastewater treatment bioreactors revealed using high-throughput sequencing

Lin Ye, Tong Zhang, Taitao Wang, Zhiwei Fang

Environmental Science & Technology. 2012, 46:13244-13252.
Analysis of the bacterial community in a laboratory-scale nitrification reactor and a wastewater treatment plant by 454-pyrosequencing

Lin Ye, Ming-Fei Shao, Tong Zhang, Amy Hin Yan Tong, Si Lok

Water Research. 2011,45:4390-4398.

Services

Committee Manager of ISO/TC 282/SC 4 Industrial water reuse
Editor of Water Science & Technology